GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppersica_Prupe.4G020500 Prupe.4G020500	Pp04	961392	964324	Phytozome	v2.1	Prunus_persica	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppersica_Prupe.4G020500.1 Prupe.4G020500.1 PAC:32092936	High	No	701		Get ORF Coding potential... Type: noncoding Potential: -1.090 Folding energies... MFEI: -20.514 AMFE: -0.543 GC content %: 37.803
Ppersica_Prupe.4G020500.2 Prupe.4G020500.2 PAC:32092937	High	No	789		Get ORF Coding potential... Type: noncoding Potential: -1.260 Folding energies... MFEI: -20.963 AMFE: -0.574 GC content %: 36.502
Ppersica_Prupe.4G020500.3 Prupe.4G020500.3 PAC:32092938	High	No	695		Get ORF Coding potential... Type: noncoding Potential: -1.244 Folding energies... MFEI: -20.417 AMFE: -0.542 GC content %: 37.698

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).