GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppersica_Prupe.4G117300 Prupe.4G117300	Pp04	6346878	6350410	Phytozome	v2.1	Prunus_persica	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppersica_Prupe.4G117300.1 Prupe.4G117300.1 PAC:32093233	High	No	1007		Get ORF Coding potential... Type: noncoding Potential: -0.607 Folding energies... MFEI: -25.412 AMFE: -0.656 GC content %: 38.729
Ppersica_Prupe.4G117300.2 Prupe.4G117300.2 PAC:32093234	High	No	819		Get ORF Coding potential... Type: noncoding Potential: -0.554 Folding energies... MFEI: -24.786 AMFE: -0.646 GC content %: 38.339

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).