GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppersica_Prupe.4G225500 Prupe.4G225500	Pp04	14230745	14231513	Phytozome	v2.1	Prunus_persica	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppersica_Prupe.4G225500.1 Prupe.4G225500.1 PAC:32092091	High	No	494		Get ORF Coding potential... Type: noncoding Potential: -0.767 Folding energies... MFEI: -29.474 AMFE: -0.653 GC content %: 45.142
Ppersica_Prupe.4G225500.2 Prupe.4G225500.2 PAC:32092092	High	No	391		Get ORF Coding potential... Type: noncoding Potential: -0.705 Folding energies... MFEI: -31.074 AMFE: -0.653 GC content %: 47.570

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).