Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ppersica_Prupe.5G213900 Prupe.5G213900 |
Pp05 | 16878306 | 16881002 | Phytozome | v2.1 | Prunus_persica | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ppersica_Prupe.5G213900.1 Prupe.5G213900.1 PAC:32098938 |
Low | Yes | 1807 | Get ORF Coding potential... Type: noncoding Potential: -1.160 Folding energies... MFEI: -25.794 AMFE: -0.718 GC content %: 35.916 | |
Ppersica_Prupe.5G213900.2 Prupe.5G213900.2 PAC:32098939 |
Low | Yes | 1597 | Get ORF Coding potential... Type: noncoding Potential: -1.045 Folding energies... MFEI: -28.804 AMFE: -0.731 GC content %: 39.386 | |
Ppersica_Prupe.5G213900.3 Prupe.5G213900.3 PAC:32098940 |
Low | No | 703 | Get ORF Coding potential... Type: noncoding Potential: -1.249 Folding energies... MFEI: -28.009 AMFE: -0.679 GC content %: 41.252 | |
Ppersica_Prupe.5G213900.4 Prupe.5G213900.4 PAC:32098941 |
High | No | 587 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -24.872 AMFE: -0.640 GC content %: 38.842 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ppersica_Prupe.5G213900.1 | Rfam | 11.0 | MIR162_2 | 1.0e-24 |
Ppersica_Prupe.5G213900.2 | Rfam | 11.0 | MIR162_2 | 9.1e-25 |
Ppersica_Prupe.5G213900.3 | RepBase (RepeatMasker) | 2014-01-31 | MERMITE18D |