Gene
Ppersica Prupe.6G140900
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Ppersica_Prupe.6G140900 Prupe.6G140900 |
Pp06 | 11419213 | 11422463 | Phytozome | v2.1 | Prunus_persica | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Ppersica_Prupe.6G140900.1 Prupe.6G140900.1 PAC:32089980 |
High | No | 1943 | Get ORF Coding potential... Type: noncoding Potential: -0.791 Folding energies... MFEI: -24.483 AMFE: -0.664 GC content %: 36.850 | |
| Ppersica_Prupe.6G140900.2 Prupe.6G140900.2 PAC:32089981 |
High | No | 1383 | Get ORF Coding potential... Type: noncoding Potential: -0.757 Folding energies... MFEI: -26.847 AMFE: -0.678 GC content %: 39.624 | |
| Ppersica_Prupe.6G140900.3 Prupe.6G140900.3 PAC:32089982 |
High | No | 1003 | Get ORF Coding potential... Type: noncoding Potential: -0.719 Folding energies... MFEI: -25.972 AMFE: -0.640 GC content %: 40.578 | |
| Ppersica_Prupe.6G140900.4 Prupe.6G140900.4 PAC:32089985 |
High | No | 1064 | Get ORF Coding potential... Type: noncoding Potential: -0.727 Folding energies... MFEI: -26.438 AMFE: -0.662 GC content %: 39.944 | |
| Ppersica_Prupe.6G140900.5 Prupe.6G140900.5 PAC:32089986 |
High | No | 924 | Get ORF Coding potential... Type: noncoding Potential: -0.709 Folding energies... MFEI: -25.909 AMFE: -0.638 GC content %: 40.584 | |
| Ppersica_Prupe.6G140900.6 Prupe.6G140900.6 PAC:32089983 |
High | No | 922 | Get ORF Coding potential... Type: noncoding Potential: -0.708 Folding energies... MFEI: -26.497 AMFE: -0.688 GC content %: 38.503 | |
| Ppersica_Prupe.6G140900.7 Prupe.6G140900.7 PAC:32089984 |
High | No | 687 | Get ORF Coding potential... Type: noncoding Potential: -0.670 Folding energies... MFEI: -25.357 AMFE: -0.665 GC content %: 38.137 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
