GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppersica_Prupe.6G217600 Prupe.6G217600	Pp06	22450630	22453904	Phytozome	v2.1	Prunus_persica	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppersica_Prupe.6G217600.1 Prupe.6G217600.1 PAC:32084687	High	No	784		Get ORF Coding potential... Type: noncoding Potential: -0.920 Folding energies... MFEI: -22.717 AMFE: -0.560 GC content %: 40.561
Ppersica_Prupe.6G217600.2 Prupe.6G217600.2 PAC:32084688	High	No	575		Get ORF Coding potential... Type: noncoding Potential: -0.857 Folding energies... MFEI: -23.409 AMFE: -0.563 GC content %: 41.565

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).