GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppersica_Prupe.6G343000 Prupe.6G343000	Pp06	29541545	29542894	Phytozome	v2.1	Prunus_persica	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppersica_Prupe.6G343000.1 Prupe.6G343000.1 PAC:32088201	High	No	1185		Get ORF Coding potential... Type: noncoding Potential: -1.199 Folding energies... MFEI: -24.819 AMFE: -0.651 GC content %: 38.143
Ppersica_Prupe.6G343000.2 Prupe.6G343000.2 PAC:32088202	High	No	1074		Get ORF Coding potential... Type: noncoding Potential: -1.184 Folding energies... MFEI: -24.683 AMFE: -0.625 GC content %: 39.479

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).