Gene

Ppersica Prupe.7G032100

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Ppersica_Prupe.7G032100
Prupe.7G032100
Pp07 5934227 5934496 Phytozome v2.1 Prunus_persica
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Ppersica_Prupe.7G032100.1
Prupe.7G032100.1
PAC:32101058
Low No 270
Coding potential...
Type: noncoding Potential: -0.389
Folding energies...
MFEI: -20.037 AMFE: -0.520
GC content
%: 38.519


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Ppersica_Prupe.7G032100.1  RepBase (RepeatMasker) 2014-01-31 Copia-73_Mad-I


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Prupe.7G032100.png