Gene

Ppersica Prupe.7G238900

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Ppersica_Prupe.7G238900
Prupe.7G238900
Pp07 20627255 20628482 Phytozome v2.1 Prunus_persica
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Ppersica_Prupe.7G238900.1
Prupe.7G238900.1
PAC:32102777
High No 936
Coding potential...
Type: noncoding Potential: -1.106
Folding energies...
MFEI: -26.122 AMFE: -0.596
GC content
%: 43.803
Ppersica_Prupe.7G238900.2
Prupe.7G238900.2
PAC:32102778
High No 1016
Coding potential...
Type: noncoding Potential: -1.051
Folding energies...
MFEI: -25.827 AMFE: -0.595
GC content
%: 43.406


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Prupe.7G238900.png