GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppersica_Prupe.7G238900 Prupe.7G238900	Pp07	20627255	20628482	Phytozome	v2.1	Prunus_persica	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppersica_Prupe.7G238900.1 Prupe.7G238900.1 PAC:32102777	High	No	936		Get ORF Coding potential... Type: noncoding Potential: -1.106 Folding energies... MFEI: -26.122 AMFE: -0.596 GC content %: 43.803
Ppersica_Prupe.7G238900.2 Prupe.7G238900.2 PAC:32102778	High	No	1016		Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -25.827 AMFE: -0.595 GC content %: 43.406

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).