GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppersica_Prupe.8G171700 Prupe.8G171700	Pp08	17555450	17557318	Phytozome	v2.1	Prunus_persica	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppersica_Prupe.8G171700.1 Prupe.8G171700.1 PAC:32083321	High	No	1095		Get ORF Coding potential... Type: noncoding Potential: -0.812 Folding energies... MFEI: -24.009 AMFE: -0.685 GC content %: 35.068
Ppersica_Prupe.8G171700.2 Prupe.8G171700.2 PAC:32083322	High	No	1058		Get ORF Coding potential... Type: noncoding Potential: -0.834 Folding energies... MFEI: -23.582 AMFE: -0.667 GC content %: 35.350

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).