GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.001G029000 Potri.001G029000	Chr01	2140798	2142680	Phytozome	v3.0	Populus_trichocarpa	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.001G029000.1 Potri.001G029000.1 PAC:27046709	High	No	574		Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -26.359 AMFE: -0.652 GC content %: 40.418
Ptrichocarpa_Potri.001G029000.2 Potri.001G029000.2 PAC:27046710	High	No	660		Get ORF Coding potential... Type: noncoding Potential: -1.084 Folding energies... MFEI: -25.758 AMFE: -0.642 GC content %: 40.152

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).