Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ptrichocarpa_Potri.001G040200 Potri.001G040200 |
Chr01 | 2899277 | 2900091 | Phytozome | v3.0 | Populus_trichocarpa | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ptrichocarpa_Potri.001G040200.1 Potri.001G040200.1 PAC:27047902 |
Low | No | 565 | Get ORF Coding potential... Type: noncoding Potential: -0.063 Folding energies... MFEI: -29.080 AMFE: -0.687 GC content %: 42.301 | |
Ptrichocarpa_Potri.001G040200.2 Potri.001G040200.2 PAC:27047903 |
Low | No | 725 | Get ORF Coding potential... Type: noncoding Potential: -0.212 Folding energies... MFEI: -26.855 AMFE: -0.662 GC content %: 40.552 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ptrichocarpa_Potri.001G040200.1 | SwissProt | 2015-06-01 | P43390 | 1.0e-11 |
Ptrichocarpa_Potri.001G040200.2 | SwissProt | 2015-06-01 | P43390 | 3.0e-11 |