GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.001G043300 Potri.001G043300	Chr01	3141287	3145737	Phytozome	v3.0	Populus_trichocarpa	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.001G043300.1 Potri.001G043300.1 PAC:27040553	High	No	650		Get ORF Coding potential... Type: noncoding Potential: -0.926 Folding energies... MFEI: -22.292 AMFE: -0.587 GC content %: 38.000
Ptrichocarpa_Potri.001G043300.2 Potri.001G043300.2 PAC:27040551	High	No	542		Get ORF Coding potential... Type: noncoding Potential: -0.831 Folding energies... MFEI: -23.044 AMFE: -0.592 GC content %: 38.930
Ptrichocarpa_Potri.001G043300.3 Potri.001G043300.3 PAC:27040552	High	No	697		Get ORF Coding potential... Type: noncoding Potential: -0.899 Folding energies... MFEI: -25.667 AMFE: -0.639 GC content %: 40.172

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).