GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.001G051300 Potri.001G051300	Chr01	3892736	3895798	Phytozome	v3.0	Populus_trichocarpa	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.001G051300.1 Potri.001G051300.1 PAC:27042614	High	No	1162		Get ORF Coding potential... Type: noncoding Potential: -0.535 Folding energies... MFEI: -23.881 AMFE: -0.606 GC content %: 39.415
Ptrichocarpa_Potri.001G051300.2 Potri.001G051300.2 PAC:27042613	High	No	884		Get ORF Coding potential... Type: noncoding Potential: -0.501 Folding energies... MFEI: -23.020 AMFE: -0.583 GC content %: 39.480

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).