Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ptrichocarpa_Potri.001G055400 Potri.001G055400 |
Chr01 | 4192874 | 4193559 | Phytozome | v3.0 | Populus_trichocarpa | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ptrichocarpa_Potri.001G055400.1 Potri.001G055400.1 PAC:27047505 |
High | No | 506 | Get ORF Coding potential... Type: noncoding Potential: -0.682 Folding energies... MFEI: -27.984 AMFE: -0.608 GC content %: 46.047 | |
Ptrichocarpa_Potri.001G055400.2 Potri.001G055400.2 PAC:27047504 |
High | No | 686 | Get ORF Coding potential... Type: noncoding Potential: -0.768 Folding energies... MFEI: -26.866 AMFE: -0.638 GC content %: 42.128 |