Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ptrichocarpa_Potri.001G076700 Potri.001G076700 |
Chr01 | 6082908 | 6086134 | Phytozome | v3.0 | Populus_trichocarpa | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ptrichocarpa_Potri.001G076700.1 Potri.001G076700.1 PAC:27040704 |
High | No | 876 | Get ORF Coding potential... Type: noncoding Potential: -0.931 Folding energies... MFEI: -23.413 AMFE: -0.581 GC content %: 40.297 | |
Ptrichocarpa_Potri.001G076700.2 Potri.001G076700.2 PAC:27040705 |
High | No | 1501 | Get ORF Coding potential... Type: noncoding Potential: -1.015 Folding energies... MFEI: -23.085 AMFE: -0.637 GC content %: 36.243 | |
Ptrichocarpa_Potri.001G076700.3 Potri.001G076700.3 PAC:27040706 |
High | No | 761 | Get ORF Coding potential... Type: noncoding Potential: -0.903 Folding energies... MFEI: -22.378 AMFE: -0.602 GC content %: 37.188 |