GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.001G082000 Potri.001G082000	Chr01	6468664	6471274	Phytozome	v3.0	Populus_trichocarpa	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.001G082000.1 Potri.001G082000.1 PAC:27048605	High	No	1246		Get ORF Coding potential... Type: noncoding Potential: -0.474 Folding energies... MFEI: -23.419 AMFE: -0.608 GC content %: 38.523
Ptrichocarpa_Potri.001G082000.2 Potri.001G082000.2 PAC:27048604	High	No	1395		Get ORF Coding potential... Type: noncoding Potential: -0.565 Folding energies... MFEI: -22.710 AMFE: -0.614 GC content %: 36.989
Ptrichocarpa_Potri.001G082000.3 Potri.001G082000.3 PAC:27048603	High	No	1027		Get ORF Coding potential... Type: noncoding Potential: -0.526 Folding energies... MFEI: -24.635 AMFE: -0.613 GC content %: 40.214
Ptrichocarpa_Potri.001G082000.4 Potri.001G082000.4 PAC:27048606	High	No	882		Get ORF Coding potential... Type: noncoding Potential: -0.581 Folding energies... MFEI: -23.356 AMFE: -0.585 GC content %: 39.909

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).