GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.001G090900 Potri.001G090900	Chr01	7151864	7156201	Phytozome	v3.0	Populus_trichocarpa	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.001G090900.3 Potri.001G090900.3 PAC:27046718	High	No	2580		Get ORF Coding potential... Type: noncoding Potential: -0.621 Folding energies... MFEI: -27.027 AMFE: -0.684 GC content %: 39.496
Ptrichocarpa_Potri.001G090900.4 Potri.001G090900.4 PAC:27046719	High	No	2701		Get ORF Coding potential... Type: noncoding Potential: -0.626 Folding energies... MFEI: -27.475 AMFE: -0.690 GC content %: 39.837

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).