Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ptrichocarpa_Potri.001G138700 Potri.001G138700 |
Chr01 | 11145032 | 11148094 | Phytozome | v3.0 | Populus_trichocarpa | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ptrichocarpa_Potri.001G138700.2 Potri.001G138700.2 PAC:27048540 |
High | No | 746 | Get ORF Coding potential... Type: noncoding Potential: -0.310 Folding energies... MFEI: -20.684 AMFE: -0.534 GC content %: 38.740 | |
Ptrichocarpa_Potri.001G138700.3 Potri.001G138700.3 PAC:27048539 |
High | No | 765 | Get ORF Coding potential... Type: noncoding Potential: -0.318 Folding energies... MFEI: -19.608 AMFE: -0.532 GC content %: 36.863 |