Gene
Ptrichocarpa Potri.001G160500
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Ptrichocarpa_Potri.001G160500 Potri.001G160500 |
Chr01 | 13381902 | 13384269 | Phytozome | v3.0 | Populus_trichocarpa | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Ptrichocarpa_Potri.001G160500.1 Potri.001G160500.1 PAC:27043984 |
High | No | 1119 | Get ORF Coding potential... Type: noncoding Potential: -0.755 Folding energies... MFEI: -27.239 AMFE: -0.658 GC content %: 41.376 | |
| Ptrichocarpa_Potri.001G160500.2 Potri.001G160500.2 PAC:27043985 |
High | No | 1257 | Get ORF Coding potential... Type: noncoding Potential: -0.780 Folding energies... MFEI: -24.630 AMFE: -0.632 GC content %: 38.982 | |
| Ptrichocarpa_Potri.001G160500.3 Potri.001G160500.3 PAC:27043986 |
High | No | 766 | Get ORF Coding potential... Type: noncoding Potential: -0.660 Folding energies... MFEI: -24.582 AMFE: -0.607 GC content %: 40.470 | |
| Ptrichocarpa_Potri.001G160500.4 Potri.001G160500.4 PAC:27043987 |
High | No | 891 | Get ORF Coding potential... Type: noncoding Potential: -0.700 Folding energies... MFEI: -24.983 AMFE: -0.605 GC content %: 41.302 | |
| Ptrichocarpa_Potri.001G160500.5 Potri.001G160500.5 PAC:27043983 |
High | No | 938 | Get ORF Coding potential... Type: noncoding Potential: -0.713 Folding energies... MFEI: -24.616 AMFE: -0.604 GC content %: 40.725 | |
| Ptrichocarpa_Potri.001G160500.6 Potri.001G160500.6 PAC:27043988 |
High | No | 702 | Get ORF Coding potential... Type: noncoding Potential: -0.635 Folding energies... MFEI: -23.462 AMFE: -0.578 GC content %: 40.598 | |
| Ptrichocarpa_Potri.001G160500.7 Potri.001G160500.7 PAC:27043989 |
High | No | 893 | Get ORF Coding potential... Type: noncoding Potential: -0.701 Folding energies... MFEI: -24.815 AMFE: -0.602 GC content %: 41.209 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
