GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.001G227800 Potri.001G227800	Chr01	23994144	23994978	Phytozome	v3.0	Populus_trichocarpa	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.001G227800.1 Potri.001G227800.1 PAC:27041903	High	No	616		Get ORF Coding potential... Type: noncoding Potential: -1.094 Folding energies... MFEI: -25.601 AMFE: -0.737 GC content %: 34.740
Ptrichocarpa_Potri.001G227800.2 Potri.001G227800.2 PAC:27041904	High	No	475		Get ORF Coding potential... Type: noncoding Potential: -1.106 Folding energies... MFEI: -25.789 AMFE: -0.712 GC content %: 36.211

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).