GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.001G245400 Potri.001G245400	Chr01	25602681	25603557	Phytozome	v3.0	Populus_trichocarpa	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.001G245400.1 Potri.001G245400.1 PAC:27047391	High	No	760		Get ORF Coding potential... Type: noncoding Potential: -0.705 Folding energies... MFEI: -28.487 AMFE: -0.694 GC content %: 41.053
Ptrichocarpa_Potri.001G245400.2 Potri.001G245400.2 PAC:27047392	High	No	677		Get ORF Coding potential... Type: noncoding Potential: -0.675 Folding energies... MFEI: -29.513 AMFE: -0.696 GC content %: 42.393

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).