Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ptrichocarpa_Potri.001G270200 Potri.001G270200 |
Chr01 | 27750031 | 27751846 | Phytozome | v3.0 | Populus_trichocarpa | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ptrichocarpa_Potri.001G270200.1 Potri.001G270200.1 PAC:27045328 |
High | No | 1126 | Get ORF Coding potential... Type: noncoding Potential: -1.053 Folding energies... MFEI: -19.968 AMFE: -0.544 GC content %: 36.679 | |
Ptrichocarpa_Potri.001G270200.2 Potri.001G270200.2 PAC:27045329 |
Low | No | 725 | Get ORF Coding potential... Type: noncoding Potential: -0.928 Folding energies... MFEI: -15.793 AMFE: -0.449 GC content %: 35.172 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ptrichocarpa_Potri.001G270200.2 | RepBase (RepeatMasker) | 2014-01-31 | hAT-6_PTr |