GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.001G274400 Potri.001G274400	Chr01	28077902	28080151	Phytozome	v3.0	Populus_trichocarpa	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.001G274400.1 Potri.001G274400.1 PAC:27046760	High	No	884		Get ORF Coding potential... Type: noncoding Potential: -0.432 Folding energies... MFEI: -24.830 AMFE: -0.633 GC content %: 39.253
Ptrichocarpa_Potri.001G274400.2 Potri.001G274400.2 PAC:27046761	High	No	835		Get ORF Coding potential... Type: noncoding Potential: -0.581 Folding energies... MFEI: -25.186 AMFE: -0.632 GC content %: 39.880
Ptrichocarpa_Potri.001G274400.3 Potri.001G274400.3 PAC:27046762	High	No	897		Get ORF Coding potential... Type: noncoding Potential: -0.894 Folding energies... MFEI: -25.407 AMFE: -0.644 GC content %: 39.465

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).