Gene
Ptrichocarpa Potri.001G298800
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Ptrichocarpa_Potri.001G298800 Potri.001G298800 |
Chr01 | 30296539 | 30298983 | Phytozome | v3.0 | Populus_trichocarpa | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Ptrichocarpa_Potri.001G298800.1 Potri.001G298800.1 PAC:27042740 |
High | No | 1170 | Get ORF Coding potential... Type: noncoding Potential: -1.282 Folding energies... MFEI: -27.325 AMFE: -0.608 GC content %: 44.957 | |
| Ptrichocarpa_Potri.001G298800.2 Potri.001G298800.2 PAC:27042743 |
High | No | 931 | Get ORF Coding potential... Type: noncoding Potential: -1.258 Folding energies... MFEI: -26.756 AMFE: -0.575 GC content %: 46.509 | |
| Ptrichocarpa_Potri.001G298800.3 Potri.001G298800.3 PAC:27042742 |
High | No | 1003 | Get ORF Coding potential... Type: noncoding Potential: -1.266 Folding energies... MFEI: -27.248 AMFE: -0.585 GC content %: 46.560 | |
| Ptrichocarpa_Potri.001G298800.4 Potri.001G298800.4 PAC:27042739 |
High | No | 899 | Get ORF Coding potential... Type: noncoding Potential: -1.254 Folding energies... MFEI: -26.774 AMFE: -0.569 GC content %: 47.052 | |
| Ptrichocarpa_Potri.001G298800.5 Potri.001G298800.5 PAC:27042741 |
High | No | 1123 | Get ORF Coding potential... Type: noncoding Potential: -1.332 Folding energies... MFEI: -26.037 AMFE: -0.582 GC content %: 44.702 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
