Gene
Ptrichocarpa Potri.001G319300
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Ptrichocarpa_Potri.001G319300 Potri.001G319300 |
Chr01 | 32405178 | 32408047 | Phytozome | v3.0 | Populus_trichocarpa | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Ptrichocarpa_Potri.001G319300.1 Potri.001G319300.1 PAC:27042758 |
High | No | 584 | Get ORF Coding potential... Type: noncoding Potential: -0.959 Folding energies... MFEI: -27.175 AMFE: -0.684 GC content %: 39.726 | |
| Ptrichocarpa_Potri.001G319300.2 Potri.001G319300.2 PAC:27042761 |
High | No | 397 | Get ORF Coding potential... Type: noncoding Potential: -0.849 Folding energies... MFEI: -23.879 AMFE: -0.564 GC content %: 42.317 | |
| Ptrichocarpa_Potri.001G319300.3 Potri.001G319300.3 PAC:27042762 |
High | No | 411 | Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -20.657 AMFE: -0.548 GC content %: 37.713 | |
| Ptrichocarpa_Potri.001G319300.4 Potri.001G319300.4 PAC:27042759 |
High | No | 410 | Get ORF Coding potential... Type: noncoding Potential: -0.859 Folding energies... MFEI: -31.195 AMFE: -0.666 GC content %: 46.829 | |
| Ptrichocarpa_Potri.001G319300.5 Potri.001G319300.5 PAC:27042760 |
High | No | 438 | Get ORF Coding potential... Type: noncoding Potential: -0.878 Folding energies... MFEI: -30.502 AMFE: -0.678 GC content %: 44.977 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
