GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.001G323200 Potri.001G323200	Chr01	32729139	32732940	Phytozome	v3.0	Populus_trichocarpa	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.001G323200.2 Potri.001G323200.2 PAC:27042284	High	No	663		Get ORF Coding potential... Type: noncoding Potential: -0.892 Folding energies... MFEI: -26.063 AMFE: -0.586 GC content %: 44.495
Ptrichocarpa_Potri.001G323200.3 Potri.001G323200.3 PAC:27042285	High	No	667		Get ORF Coding potential... Type: noncoding Potential: -1.049 Folding energies... MFEI: -26.552 AMFE: -0.596 GC content %: 44.528

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).