GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.001G328800 Potri.001G328800	Chr01	33296593	33297596	Phytozome	v3.0	Populus_trichocarpa	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.001G328800.1 Potri.001G328800.1 PAC:27046701	High	No	957		Get ORF Coding potential... Type: noncoding Potential: -1.003 Folding energies... MFEI: -24.096 AMFE: -0.641 GC content %: 37.618
Ptrichocarpa_Potri.001G328800.2 Potri.001G328800.2 PAC:27046700	High	No	953		Get ORF Coding potential... Type: noncoding Potential: -1.002 Folding energies... MFEI: -23.903 AMFE: -0.635 GC content %: 37.671

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).