Gene
Ptrichocarpa Potri.001G333800
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Ptrichocarpa_Potri.001G333800 Potri.001G333800 |
Chr01 | 33701366 | 33704070 | Phytozome | v3.0 | Populus_trichocarpa | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Ptrichocarpa_Potri.001G333800.1 Potri.001G333800.1 PAC:27044192 |
High | No | 970 | Get ORF Coding potential... Type: noncoding Potential: -0.872 Folding energies... MFEI: -24.320 AMFE: -0.581 GC content %: 41.856 | |
| Ptrichocarpa_Potri.001G333800.2 Potri.001G333800.2 PAC:27044196 |
High | No | 1022 | Get ORF Coding potential... Type: noncoding Potential: -0.878 Folding energies... MFEI: -24.178 AMFE: -0.580 GC content %: 41.683 | |
| Ptrichocarpa_Potri.001G333800.3 Potri.001G333800.3 PAC:27044193 |
High | No | 1012 | Get ORF Coding potential... Type: noncoding Potential: -0.877 Folding energies... MFEI: -24.891 AMFE: -0.594 GC content %: 41.897 | |
| Ptrichocarpa_Potri.001G333800.4 Potri.001G333800.4 PAC:27044195 |
High | No | 1064 | Get ORF Coding potential... Type: noncoding Potential: -0.883 Folding energies... MFEI: -24.840 AMFE: -0.595 GC content %: 41.729 | |
| Ptrichocarpa_Potri.001G333800.5 Potri.001G333800.5 PAC:27044197 |
High | No | 1168 | Get ORF Coding potential... Type: noncoding Potential: -0.917 Folding energies... MFEI: -25.428 AMFE: -0.633 GC content %: 40.154 | |
| Ptrichocarpa_Potri.001G333800.6 Potri.001G333800.6 PAC:27044194 |
High | No | 1116 | Get ORF Coding potential... Type: noncoding Potential: -0.882 Folding energies... MFEI: -25.502 AMFE: -0.634 GC content %: 40.233 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
