GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.001G341500 Potri.001G341500	Chr01	34628748	34629921	Phytozome	v3.0	Populus_trichocarpa	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.001G341500.1 Potri.001G341500.1 PAC:27041899	High	No	997		Get ORF Coding potential... Type: noncoding Potential: -1.094 Folding energies... MFEI: -20.752 AMFE: -0.621 GC content %: 33.400
Ptrichocarpa_Potri.001G341500.2 Potri.001G341500.2 PAC:27041898	High	No	890		Get ORF Coding potential... Type: noncoding Potential: -1.070 Folding energies... MFEI: -21.326 AMFE: -0.643 GC content %: 33.146

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).