GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.001G344700 Potri.001G344700	Chr01	35004017	35006080	Phytozome	v3.0	Populus_trichocarpa	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.001G344700.1 Potri.001G344700.1 PAC:27042597	High	No	689		Get ORF Coding potential... Type: noncoding Potential: -0.869 Folding energies... MFEI: -23.774 AMFE: -0.573 GC content %: 41.509
Ptrichocarpa_Potri.001G344700.2 Potri.001G344700.2 PAC:27042598	High	No	686		Get ORF Coding potential... Type: noncoding Potential: -0.890 Folding energies... MFEI: -23.848 AMFE: -0.576 GC content %: 41.399

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).