Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ptrichocarpa_Potri.001G385200 Potri.001G385200 |
Chr01 | 40033806 | 40043338 | Phytozome | v3.0 | Populus_trichocarpa | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ptrichocarpa_Potri.001G385200.4 Potri.001G385200.4 PAC:27041812 |
Low | No | 552 | Get ORF Coding potential... Type: noncoding Potential: -0.740 Folding energies... MFEI: -22.518 AMFE: -0.531 GC content %: 42.391 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ptrichocarpa_Potri.001G385200.4 | SwissProt | 2015-06-01 | C0LGN2 | 7.0e-15 |
Ptrichocarpa_Potri.001G385200.4 | RepBase (RepeatMasker) | 2014-01-31 | Copia-75_Mad-LTR |