Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ptrichocarpa_Potri.001G386100 Potri.001G386100 |
Chr01 | 40162830 | 40163199 | Phytozome | v3.0 | Populus_trichocarpa | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ptrichocarpa_Potri.001G386100.1 Potri.001G386100.1 PAC:27043300 |
Low | No | 370 | Get ORF Coding potential... Type: noncoding Potential: -0.501 Folding energies... MFEI: -25.973 AMFE: -0.579 GC content %: 44.865 | |
Ptrichocarpa_Potri.001G386100.2 Potri.001G386100.2 PAC:27043301 |
High | No | 337 | Get ORF Coding potential... Type: noncoding Potential: -0.597 Folding energies... MFEI: -24.540 AMFE: -0.544 GC content %: 45.104 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ptrichocarpa_Potri.001G386100.1 | SwissProt | 2015-06-01 | C0LGG8 | 2.0e-7 |