GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.001G387000 Potri.001G387000	Chr01	40320243	40321531	Phytozome	v3.0	Populus_trichocarpa	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.001G387000.1 Potri.001G387000.1 PAC:27040765	High	No	763		Get ORF Coding potential... Type: noncoding Potential: -0.487 Folding energies... MFEI: -31.140 AMFE: -0.727 GC content %: 42.857
Ptrichocarpa_Potri.001G387000.2 Potri.001G387000.2 PAC:27040764	High	No	752		Get ORF Coding potential... Type: noncoding Potential: -0.483 Folding energies... MFEI: -30.811 AMFE: -0.722 GC content %: 42.686
Ptrichocarpa_Potri.001G387000.3 Potri.001G387000.3 PAC:27040766	High	No	784		Get ORF Coding potential... Type: noncoding Potential: -0.494 Folding energies... MFEI: -30.663 AMFE: -0.715 GC content %: 42.857

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).