GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.001G402000 Potri.001G402000	Chr01	42330141	42332178	Phytozome	v3.0	Populus_trichocarpa	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.001G402000.1 Potri.001G402000.1 PAC:27040795	High	No	1345		Get ORF Coding potential... Type: noncoding Potential: -1.052 Folding energies... MFEI: -25.271 AMFE: -0.689 GC content %: 36.654
Ptrichocarpa_Potri.001G402000.2 Potri.001G402000.2 PAC:27040796	High	No	770		Get ORF Coding potential... Type: noncoding Potential: -1.009 Folding energies... MFEI: -26.948 AMFE: -0.669 GC content %: 40.260
Ptrichocarpa_Potri.001G402000.3 Potri.001G402000.3 PAC:27040797	High	No	571		Get ORF Coding potential... Type: noncoding Potential: -0.944 Folding energies... MFEI: -26.375 AMFE: -0.655 GC content %: 40.280

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).