Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ptrichocarpa_Potri.001G406200 Potri.001G406200 |
Chr01 | 42863040 | 42864992 | Phytozome | v3.0 | Populus_trichocarpa | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ptrichocarpa_Potri.001G406200.1 Potri.001G406200.1 PAC:27040614 |
Low | No | 1250 | Get ORF Coding potential... Type: noncoding Potential: -0.857 Folding energies... MFEI: -25.950 AMFE: -0.625 GC content %: 41.520 | |
Ptrichocarpa_Potri.001G406200.2 Potri.001G406200.2 PAC:27040615 |
Low | No | 1120 | Get ORF Coding potential... Type: noncoding Potential: -1.027 Folding energies... MFEI: -25.971 AMFE: -0.607 GC content %: 42.768 | |
Ptrichocarpa_Potri.001G406200.3 Potri.001G406200.3 PAC:27040616 |
Low | No | 1193 | Get ORF Coding potential... Type: noncoding Potential: -1.039 Folding energies... MFEI: -26.402 AMFE: -0.622 GC content %: 42.414 | |
Ptrichocarpa_Potri.001G406200.4 Potri.001G406200.4 PAC:27040617 |
Low | No | 1152 | Get ORF Coding potential... Type: noncoding Potential: -1.033 Folding energies... MFEI: -26.196 AMFE: -0.615 GC content %: 42.622 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ptrichocarpa_Potri.001G406200.3 | RepBase (RepeatMasker) | 2014-01-31 | HAT-N6_Mad | |
Ptrichocarpa_Potri.001G406200.4 | RepBase (RepeatMasker) | 2014-01-31 | HAT-N6_Mad | |
Ptrichocarpa_Potri.001G406200.1 | RepBase (RepeatMasker) | 2014-01-31 | HAT-N6_Mad | |
Ptrichocarpa_Potri.001G406200.2 | RepBase (RepeatMasker) | 2014-01-31 | HAT-N6_Mad |