GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.001G406900 Potri.001G406900	Chr01	42926423	42927711	Phytozome	v3.0	Populus_trichocarpa	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.001G406900.1 Potri.001G406900.1 PAC:27041315	High	No	628		Get ORF Coding potential... Type: noncoding Potential: -0.383 Folding energies... MFEI: -24.777 AMFE: -0.657 GC content %: 37.739
Ptrichocarpa_Potri.001G406900.2 Potri.001G406900.2 PAC:27041316	High	No	696		Get ORF Coding potential... Type: noncoding Potential: -0.711 Folding energies... MFEI: -21.997 AMFE: -0.612 GC content %: 35.920

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).