Gene
Ptrichocarpa Potri.001G460200
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Ptrichocarpa_Potri.001G460200 Potri.001G460200 |
Chr01 | 49398886 | 49400563 | Phytozome | v3.0 | Populus_trichocarpa | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Ptrichocarpa_Potri.001G460200.1 Potri.001G460200.1 PAC:27043072 |
High | No | 987 | Get ORF Coding potential... Type: noncoding Potential: -1.063 Folding energies... MFEI: -24.668 AMFE: -0.624 GC content %: 39.514 | |
| Ptrichocarpa_Potri.001G460200.2 Potri.001G460200.2 PAC:27043069 |
High | No | 1287 | Get ORF Coding potential... Type: noncoding Potential: -1.103 Folding energies... MFEI: -22.681 AMFE: -0.635 GC content %: 35.742 | |
| Ptrichocarpa_Potri.001G460200.3 Potri.001G460200.3 PAC:27043070 |
High | No | 885 | Get ORF Coding potential... Type: noncoding Potential: -1.036 Folding energies... MFEI: -23.356 AMFE: -0.623 GC content %: 37.514 | |
| Ptrichocarpa_Potri.001G460200.4 Potri.001G460200.4 PAC:27043073 |
High | No | 726 | Get ORF Coding potential... Type: noncoding Potential: -0.968 Folding energies... MFEI: -23.168 AMFE: -0.596 GC content %: 38.843 | |
| Ptrichocarpa_Potri.001G460200.5 Potri.001G460200.5 PAC:27043074 |
High | No | 621 | Get ORF Coding potential... Type: noncoding Potential: -0.963 Folding energies... MFEI: -23.414 AMFE: -0.575 GC content %: 40.741 | |
| Ptrichocarpa_Potri.001G460200.6 Potri.001G460200.6 PAC:27043071 |
High | No | 634 | Get ORF Coding potential... Type: noncoding Potential: -1.000 Folding energies... MFEI: -24.306 AMFE: -0.621 GC content %: 39.117 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
