Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ptrichocarpa_Potri.002G081500 Potri.002G081500 |
Chr02 | 5673810 | 5674737 | Phytozome | v3.0 | Populus_trichocarpa | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ptrichocarpa_Potri.002G081500.2 Potri.002G081500.2 PAC:27021560 |
Low | No | 741 | Get ORF Coding potential... Type: noncoding Potential: -0.734 Folding energies... MFEI: -23.698 AMFE: -0.578 GC content %: 41.026 | |
Ptrichocarpa_Potri.002G081500.3 Potri.002G081500.3 PAC:27021561 |
Low | No | 619 | Get ORF Coding potential... Type: noncoding Potential: -0.774 Folding energies... MFEI: -23.635 AMFE: -0.554 GC content %: 42.649 | |
Ptrichocarpa_Potri.002G081500.4 Potri.002G081500.4 PAC:27021562 |
High | No | 836 | Get ORF Coding potential... Type: noncoding Potential: -0.816 Folding energies... MFEI: -23.708 AMFE: -0.590 GC content %: 40.191 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ptrichocarpa_Potri.002G081500.2 | SwissProt | 2015-06-01 | Q9FDX9 | 2.0e-4 |
Ptrichocarpa_Potri.002G081500.3 | SwissProt | 2015-06-01 | Q93V47 | 2.0e-9 |