GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.002G086300 Potri.002G086300	Chr02	6073844	6075629	Phytozome	v3.0	Populus_trichocarpa	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.002G086300.1 Potri.002G086300.1 PAC:27024067	High	No	1088		Get ORF Coding potential... Type: noncoding Potential: -0.914 Folding energies... MFEI: -25.340 AMFE: -0.607 GC content %: 41.728
Ptrichocarpa_Potri.002G086300.2 Potri.002G086300.2 PAC:27024068	High	No	668		Get ORF Coding potential... Type: noncoding Potential: -0.879 Folding energies... MFEI: -25.719 AMFE: -0.632 GC content %: 40.719
Ptrichocarpa_Potri.002G086300.4 Potri.002G086300.4 PAC:27024070	High	No	670		Get ORF Coding potential... Type: noncoding Potential: -0.880 Folding energies... MFEI: -25.552 AMFE: -0.627 GC content %: 40.746

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).