Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ptrichocarpa_Potri.002G089300 Potri.002G089300 |
Chr02 | 6340065 | 6342765 | Phytozome | v3.0 | Populus_trichocarpa | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ptrichocarpa_Potri.002G089300.2 Potri.002G089300.2 PAC:27024378 |
Low | No | 823 | Get ORF Coding potential... Type: noncoding Potential: -0.878 Folding energies... MFEI: -26.343 AMFE: -0.612 GC content %: 43.013 | |
Ptrichocarpa_Potri.002G089300.3 Potri.002G089300.3 PAC:27024377 |
Low | No | 833 | Get ORF Coding potential... Type: noncoding Potential: -0.802 Folding energies... MFEI: -26.747 AMFE: -0.617 GC content %: 43.337 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ptrichocarpa_Potri.002G089300.2 | SwissProt | 2015-06-01 | Q54T60 | 6.0e-4 |
Ptrichocarpa_Potri.002G089300.3 | SwissProt | 2015-06-01 | Q54T60 | 4.0e-4 |