Gene
Ptrichocarpa Potri.002G120500
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Ptrichocarpa_Potri.002G120500 Potri.002G120500 |
Chr02 | 9033310 | 9035291 | Phytozome | v3.0 | Populus_trichocarpa | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Ptrichocarpa_Potri.002G120500.1 Potri.002G120500.1 PAC:27024102 |
High | No | 750 | Get ORF Coding potential... Type: noncoding Potential: -0.659 Folding energies... MFEI: -25.800 AMFE: -0.632 GC content %: 40.800 | |
| Ptrichocarpa_Potri.002G120500.2 Potri.002G120500.2 PAC:27024101 |
High | No | 739 | Get ORF Coding potential... Type: noncoding Potential: -0.655 Folding energies... MFEI: -26.049 AMFE: -0.635 GC content %: 41.001 | |
| Ptrichocarpa_Potri.002G120500.3 Potri.002G120500.3 PAC:27024103 |
High | No | 744 | Get ORF Coding potential... Type: noncoding Potential: -0.675 Folding energies... MFEI: -26.008 AMFE: -0.641 GC content %: 40.591 | |
| Ptrichocarpa_Potri.002G120500.4 Potri.002G120500.4 PAC:27024104 |
High | No | 824 | Get ORF Coding potential... Type: noncoding Potential: -0.783 Folding energies... MFEI: -25.570 AMFE: -0.642 GC content %: 39.806 | |
| Ptrichocarpa_Potri.002G120500.5 Potri.002G120500.5 PAC:27024105 |
High | No | 720 | Get ORF Coding potential... Type: noncoding Potential: -0.703 Folding energies... MFEI: -25.389 AMFE: -0.630 GC content %: 40.278 | |
| Ptrichocarpa_Potri.002G120500.6 Potri.002G120500.6 PAC:27024100 |
High | No | 807 | Get ORF Coding potential... Type: noncoding Potential: -0.677 Folding energies... MFEI: -25.229 AMFE: -0.626 GC content %: 40.273 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
