Gene
Ptrichocarpa Potri.002G122800
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Ptrichocarpa_Potri.002G122800 Potri.002G122800 |
Chr02 | 9180349 | 9181385 | Phytozome | v3.0 | Populus_trichocarpa | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Ptrichocarpa_Potri.002G122800.1 Potri.002G122800.1 PAC:27024722 |
High | No | 886 | Get ORF Coding potential... Type: noncoding Potential: -0.647 Folding energies... MFEI: -25.192 AMFE: -0.672 GC content %: 37.472 | |
| Ptrichocarpa_Potri.002G122800.2 Potri.002G122800.2 PAC:27024720 |
High | No | 946 | Get ORF Coding potential... Type: noncoding Potential: -0.618 Folding energies... MFEI: -24.873 AMFE: -0.667 GC content %: 37.315 | |
| Ptrichocarpa_Potri.002G122800.3 Potri.002G122800.3 PAC:27024721 |
High | No | 792 | Get ORF Coding potential... Type: noncoding Potential: -0.576 Folding energies... MFEI: -24.634 AMFE: -0.640 GC content %: 38.510 | |
| Ptrichocarpa_Potri.002G122800.4 Potri.002G122800.4 PAC:27024723 |
High | No | 845 | Get ORF Coding potential... Type: noncoding Potential: -0.636 Folding energies... MFEI: -24.686 AMFE: -0.650 GC content %: 37.988 | |
| Ptrichocarpa_Potri.002G122800.5 Potri.002G122800.5 PAC:27024724 |
High | No | 943 | Get ORF Coding potential... Type: noncoding Potential: -0.661 Folding energies... MFEI: -24.920 AMFE: -0.670 GC content %: 37.222 | |
| Ptrichocarpa_Potri.002G122800.6 Potri.002G122800.6 PAC:27024725 |
High | No | 789 | Get ORF Coding potential... Type: noncoding Potential: -0.619 Folding energies... MFEI: -24.702 AMFE: -0.643 GC content %: 38.403 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
