GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.002G175500 Potri.002G175500	Chr02	13467619	13469378	Phytozome	v3.0	Populus_trichocarpa	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.002G175500.1 Potri.002G175500.1 PAC:27024035	High	No	524		Get ORF Coding potential... Type: noncoding Potential: -0.489 Folding energies... MFEI: -26.431 AMFE: -0.589 GC content %: 44.847
Ptrichocarpa_Potri.002G175500.2 Potri.002G175500.2 PAC:27024036	High	No	446		Get ORF Coding potential... Type: noncoding Potential: -0.490 Folding energies... MFEI: -26.726 AMFE: -0.602 GC content %: 44.395

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).