Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ptrichocarpa_Potri.002G250900 Potri.002G250900 |
Chr02 | 24088688 | 24090820 | Phytozome | v3.0 | Populus_trichocarpa | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ptrichocarpa_Potri.002G250900.1 Potri.002G250900.1 PAC:27024007 |
Low | No | 745 | Get ORF Coding potential... Type: coding Potential: 0.295 Folding energies... MFEI: -24.067 AMFE: -0.610 GC content %: 39.463 | |
Ptrichocarpa_Potri.002G250900.2 Potri.002G250900.2 PAC:27024008 |
Low | No | 696 | Get ORF Coding potential... Type: coding Potential: 0.313 Folding energies... MFEI: -23.405 AMFE: -0.586 GC content %: 39.943 | |
Ptrichocarpa_Potri.002G250900.3 Potri.002G250900.3 PAC:27024006 |
Low | No | 607 | Get ORF Coding potential... Type: coding Potential: 0.352 Folding energies... MFEI: -22.850 AMFE: -0.600 GC content %: 38.056 |