GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.002G252400 Potri.002G252400	Chr02	24163975	24164912	Phytozome	v3.0	Populus_trichocarpa	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.002G252400.10 Potri.002G252400.10 PAC:27020873	High	No	704		Get ORF Coding potential... Type: noncoding Potential: -0.396 Folding energies... MFEI: -25.909 AMFE: -0.638 GC content %: 40.625
Ptrichocarpa_Potri.002G252400.2 Potri.002G252400.2 PAC:27020872	High	No	693		Get ORF Coding potential... Type: noncoding Potential: -0.554 Folding energies... MFEI: -25.007 AMFE: -0.630 GC content %: 39.683

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).