GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.003G026700 Potri.003G026700	Chr03	3229079	3230330	Phytozome	v3.0	Populus_trichocarpa	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.003G026700.1 Potri.003G026700.1 PAC:26999244	High	No	760		Get ORF Coding potential... Type: noncoding Potential: -0.589 Folding energies... MFEI: -31.737 AMFE: -0.720 GC content %: 44.079
Ptrichocarpa_Potri.003G026700.2 Potri.003G026700.2 PAC:26999245	High	No	757		Get ORF Coding potential... Type: noncoding Potential: -0.535 Folding energies... MFEI: -31.849 AMFE: -0.722 GC content %: 44.122

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).