GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.003G140300 Potri.003G140300	Chr03	15780285	15781862	Phytozome	v3.0	Populus_trichocarpa	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.003G140300.1 Potri.003G140300.1 PAC:27000202	High	No	651		Get ORF Coding potential... Type: noncoding Potential: -0.613 Folding energies... MFEI: -26.237 AMFE: -0.599 GC content %: 43.779
Ptrichocarpa_Potri.003G140300.2 Potri.003G140300.2 PAC:27000203	High	No	689		Get ORF Coding potential... Type: noncoding Potential: -0.702 Folding energies... MFEI: -25.718 AMFE: -0.593 GC content %: 43.396

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).