Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ptrichocarpa_Potri.004G148200 Potri.004G148200 |
Chr04 | 17083324 | 17083956 | Phytozome | v3.0 | Populus_trichocarpa | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ptrichocarpa_Potri.004G148200.1 Potri.004G148200.1 PAC:26991200 |
High | No | 604 | Get ORF Coding potential... Type: noncoding Potential: -0.711 Folding energies... MFEI: -26.440 AMFE: -0.647 GC content %: 40.894 | |
Ptrichocarpa_Potri.004G148200.2 Potri.004G148200.2 PAC:26991202 |
High | No | 600 | Get ORF Coding potential... Type: noncoding Potential: -0.709 Folding energies... MFEI: -26.367 AMFE: -0.646 GC content %: 40.833 | |
Ptrichocarpa_Potri.004G148200.3 Potri.004G148200.3 PAC:26991201 |
High | No | 589 | Get ORF Coding potential... Type: noncoding Potential: -0.704 Folding energies... MFEI: -26.706 AMFE: -0.658 GC content %: 40.577 |