GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.006G041600 Potri.006G041600	Chr06	2976995	2983206	Phytozome	v3.0	Populus_trichocarpa	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.006G041600.1 Potri.006G041600.1 PAC:27007027	High	No	474		Get ORF Coding potential... Type: noncoding Potential: -0.941 Folding energies... MFEI: -27.004 AMFE: -0.688 GC content %: 39.241
Ptrichocarpa_Potri.006G041600.2 Potri.006G041600.2 PAC:27007028	High	No	742		Get ORF Coding potential... Type: noncoding Potential: -1.028 Folding energies... MFEI: -25.970 AMFE: -0.669 GC content %: 38.814
Ptrichocarpa_Potri.006G041600.3 Potri.006G041600.3 PAC:27007029	High	No	670		Get ORF Coding potential... Type: noncoding Potential: -1.094 Folding energies... MFEI: -27.955 AMFE: -0.699 GC content %: 40.000

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).